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ibiem2020
IBIEM2020
Commits
f872269b
Commit
f872269b
authored
Sep 08, 2019
by
josh
Browse files
Got rid of bioclite (forgot with last commit)
parent
c67366f7
Changes
1
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f872269b
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@@ -191,10 +191,6 @@ RUN Rscript -e "install.packages(pkgs = c('fs','phangorn','ips','unvotes','DT','
dependencies=TRUE,
\
clean = TRUE)"
RUN
Rscript
-e
"source('https://bioconductor.org/biocLite.R');
\
biocLite(pkgs=c('dada2','ShortRead','phyloseq','msa','DESeq2','metagenomeSeq','DECIPHER','ALDEx2'))"
RUN
Rscript
-e
"if (!requireNamespace('BiocManager')){install.packages('BiocManager')};
\
BiocManager::install(c('dada2','ShortRead','phyloseq','msa','DESeq2','metagenomeSeq','DECIPHER','ALDEx2'))"
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