Commit f872269b authored by josh's avatar josh
Browse files

Got rid of bioclite (forgot with last commit)

parent c67366f7
......@@ -191,10 +191,6 @@ RUN Rscript -e "install.packages(pkgs = c('fs','phangorn','ips','unvotes','DT','
dependencies=TRUE, \
clean = TRUE)"
RUN Rscript -e "source('https://bioconductor.org/biocLite.R'); \
biocLite(pkgs=c('dada2','ShortRead','phyloseq','msa','DESeq2','metagenomeSeq','DECIPHER','ALDEx2'))"
RUN Rscript -e "if (!requireNamespace('BiocManager')){install.packages('BiocManager')}; \
BiocManager::install(c('dada2','ShortRead','phyloseq','msa','DESeq2','metagenomeSeq','DECIPHER','ALDEx2'))"
......
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