Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
ibiem2020
IBIEM2020
Commits
cd3fb227
Commit
cd3fb227
authored
Apr 12, 2021
by
josh
Browse files
fix permissions on shi7 binaries
parent
8e15b5f2
Pipeline
#211390
passed with stages
in 11 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
Dockerfile
View file @
cd3fb227
...
...
@@ -399,7 +399,8 @@ RUN curl -L -s -o shi7.tar.gz https://github.com/knights-lab/shi7/archive/refs/t
pip3
install
--no-cache-dir
shi7.tar.gz
&&
\
tar
-zxf
shi7.tar.gz
&&
\
mv
shi7-1.0.2/bin/gotta_split_linux /opt/bin/gotta_split
&&
\
mv
shi7-1.0.2/bin/shi7_trimmer_linux /opt/bin/shi7_trimmer
&&
\
mv
shi7-1.0.2/bin/shi7_trimmer_linux /opt/bin/shi7_trimmer
&&
\
chmod
555 /opt/bin/gotta_split /opt/bin/shi7_trimmer
&&
\
rm
-rf
shi7.tar.gz shi7-1.0.2
# Use trimmomatic.py from bioconda to make shi7 happy
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment