Commit 8e15b5f2 authored by josh's avatar josh
Browse files

install shi7 binaries

parent 70cf9fad
Pipeline #211389 passed with stages
in 13 seconds
......@@ -397,7 +397,10 @@ RUN mkdir kaiju && \
# --------------------
RUN curl -L -s -o shi7.tar.gz https://github.com/knights-lab/shi7/archive/refs/tags/v1.0.2.tar.gz && \
pip3 install --no-cache-dir shi7.tar.gz && \
rm shi7.tar.gz
tar -zxf shi7.tar.gz && \
mv shi7-1.0.2/bin/gotta_split_linux /opt/bin/gotta_split && \
mv shi7-1.0.2/bin/shi7_trimmer_linux /opt/bin/shi7_trimmer && \
rm -rf shi7.tar.gz shi7-1.0.2
# Use trimmomatic.py from bioconda to make shi7 happy
COPY trimmomatic.py /opt/bin/trimmomatic
......
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