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ibiem2020
IBIEM2020
Commits
4a7d7efc
Commit
4a7d7efc
authored
Jan 21, 2020
by
Josh
Browse files
Make all wget not verbose
parent
77f7e932
Changes
1
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View file @
4a7d7efc
...
...
@@ -80,7 +80,7 @@ RUN apt-get update && \
dpkg-sig
\
libapparmor1
RUN
wget https://download2.rstudio.org/rstudio-server-1.1.383-amd64.deb
RUN
wget
--no-verbose
https://download2.rstudio.org/rstudio-server-1.1.383-amd64.deb
RUN
gdebi
-n
rstudio-server-1.1.383-amd64.deb
RUN
rm
rstudio-server-1.1.383-amd64.deb
# https://github.com/inversepath/usbarmory-debian-base_image/issues/9
...
...
@@ -287,7 +287,7 @@ RUN apt-get update && \
# install fastq-mcf and fastq-multx from source since apt-get install causes problems
RUN
mkdir
-p
/usr/bin
&&
\
cd
/tmp
&&
\
wget https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz
&&
\
wget
--no-verbose
https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz
&&
\
tar
-zxf
1.04.807.tar.gz
&&
\
cd
ea-utils-1.04.807/clipper
&&
\
make fastq-mcf fastq-multx
&&
\
...
...
@@ -305,7 +305,7 @@ RUN apt-get update && \
# UNDER CONSTRUCTION: Nerd Work Zone >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
# Install RAxML-NG
RUN
mkdir
-p
$MANUAL_BIN
download
&&
\
wget
--directory-prefix
download
--no-verbose
https://github.com/amkozlov/raxml-ng/releases/download/0.9.0/raxml-ng_v0.9.0_linux_x86_64.zip
&&
\
wget
--no-verbose
--directory-prefix
download
--no-verbose
https://github.com/amkozlov/raxml-ng/releases/download/0.9.0/raxml-ng_v0.9.0_linux_x86_64.zip
&&
\
unzip
-d
download download/raxml-ng_v0.9.0_linux_x86_64.zip
&&
\
mv
download/raxml-ng
$MANUAL_BIN
&&
\
rm
-rf
download
...
...
@@ -319,7 +319,7 @@ RUN Rscript -e "install.packages(pkg='phangorn',repos='http://archive.linux.duke
#SEPP for greengenes
RUN
cd
/opt
&&
\
wget https://raw.github.com/smirarab/sepp-refs/master/gg/sepp-package.tar.bz
&&
\
wget
--no-verbose
https://raw.github.com/smirarab/sepp-refs/master/gg/sepp-package.tar.bz
&&
\
tar
-xjf
sepp-package.tar.bz
&&
\
cd
/opt/sepp-package/sepp
&&
\
python3 setup.py config
-c
&&
\
...
...
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