Commit 1fac5c53 authored by josh's avatar josh
Browse files

install microbiomeMarker R package

parent f50c9fe9
Pipeline #201755 passed with stages
in 59 minutes and 41 seconds
......@@ -207,7 +207,8 @@ RUN Rscript -e "install.packages(pkgs = c('fs','ips','unvotes','DT','sandwich','
RUN Rscript -e "if (!requireNamespace('BiocManager')){install.packages('BiocManager')}; \
BiocManager::install(c('dada2','ShortRead','phyloseq','msa','DESeq2','metagenomeSeq','ALDEx2','decontam','ANCOMBC','lefser', 'annotate','Biostrings'),version=$BIOCONDUCTOR_VERSION)" && \
Rscript -e "devtools::install_github('mhahsler/rBLAST',version=$BIOCONDUCTOR_VERSION)"
Rscript -e "devtools::install_github('mhahsler/rBLAST')" && \
Rscript -e "devtools::install_github('yiluheihei/microbiomeMarker')" && \
# Trans-ABySS
RUN mkdir -p $MANUAL_BIN $MANUAL_SHARE ; \
......
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