Commit 11934760 authored by josh's avatar josh
Browse files

Add ANCOMBC

parent ac3f92c0
Pipeline #192173 canceled with stages
......@@ -201,7 +201,7 @@ RUN Rscript -e "install.packages(pkgs = c('fs','ips','unvotes','DT','sandwich','
clean = TRUE)"
RUN Rscript -e "if (!requireNamespace('BiocManager')){install.packages('BiocManager')}; \
BiocManager::install(c('dada2','ShortRead','phyloseq','msa','DESeq2','metagenomeSeq','ALDEx2','decontam'))"
BiocManager::install(c('dada2','ShortRead','phyloseq','msa','DESeq2','metagenomeSeq','ALDEx2','decontam','ANCOMBC'))"
# need to install older version of multcomp to avoid dependency on newer mvtnorm, which depends on newer R
# also needed to install multcomp dependencies: "sandwich","TH.data"
......
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